Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926589.1_cds_XP_016474567.1_66580
CDS Infomation

[gene=LOC107796328] [db_xref=GeneID:107796328] [protein=putative E3 ubiquitin-protein ligase LIN] [protein_id=XP_016474567.1] [location=join(3187..4247,4368..4503,4594..5567,5652..5799,5909..6160,6244..6553,6647..6786)] [gbkey=CDS]
Sequence

ATGGCCTCTCTTCAAGAATTGCTAACTGAAGAAGGTTTTGAGAGTACAAAAAGAACACCT
ACAAAAACTCACAGAAAAGTCAAGTTCAAAGACAGAACAACTTTTCAAGAAGATTCAAAC
ATTGCTTTACCTATTTACATTTGCCATGACAGAAGATCATCCTTGGATTTCTCCAAGAAC
AAATCCCGAAAACCCTTTTCCAGTTCTAGTTCTTCGGTCCACTCATCGATAAGATCAAAT
GTGAAGTCCATTGTTGAAGTCAGTATTCCAAGAAGAGATGAGCCAGCTATTGATGAAGTT
GCTATTAGAGCAGTCATTTCTATACTTAGTGGCTTTGTAGGACAATATTTGAGGGACAAA
GATTTTCGCGAAACCATTAAGGAGAAATGCTATGCTTGTTTTGTGAGGAAGAAGAATCAT
ATTTCGGATAATGGGATTTTTGCAGATATGGAATTGGCTATTGAGAGTATAGAGAGACTA
GTTGAGAGCATTGATGATACACAAAGGGAAGTAAAAGCTAAGTCTTTGCAATACTCTATT
AGGCTATTGACAATTGTGTCATCTTTGAATTCCAACAACACTGGAAATGTCTCAACTTGT
GGAATTCCCAATTCCAATCTCTCTGCTTGTGCACAACTCTACTTATCCATTGTTTACAAG
CTAGAAAAAAATGATAGAATTGCAGCTAGGCATTTACTCCAGGTATTCGTTGATTCGCCA
TTTCTTGCTCGGACACACTTGCTTCCTGAACTTTGGGAGCATTTGTTTCTTCCTCACCTT
CTTCATCTCAAGATTTGGCATACACAAGAAGTAGAAGTTTTTTCAACTTTGGATTGTGTT
GACAAGGAGAAGCAGATGAAAGCCTTAAACAAGGTCTATAATGACCACATAGATATTGGT
ACAACAAAGTTTGCTCTTTACTATAAACAATGGCTCAAGGTTGGTGCCCAAGCCCCTGCT
GTTCCTTCTGTGCCTTTGCCTTATAAATTGGGTCACTCGCTTTCTAGAAGACGATCTTTG
GATTCTTTCACCTCCAATTCCTCCGTCAAGAATAACTCACTATATCGAGCTGTTTTTGGA
CCGATTATGGAGAGGAAATCTATGGATTCTGTAAGAAATGGAATTTGGGATTATAAGGAG
GAAGAAGAGAAGATTTCAGCTATTGGAGATGACAATAAGCAAGGCAATTATGTTCCAAAG
AAAGCAGTGGTTCATCGAAGATCATCGACTCAAAGTTACAGAACCCCAAAACATGATCTG
TGGGCTCATACTCATAAAAAATCAGACTATTTCCGGTTTTTCAATTGTCAAAGCGAGCCT
GTAGAGTTCTTGAGAGAAGGAAAGAGTAATATTGGCAGTGTTTCCATCAGAAAGGAAGAA
AAAACCACTCCTGTTTCAAGTGATCTAAGTAGAGCTATCTTCATGATTTGCTCCTCAGAT
AGCTTAAGTGACTGTGAACTGGCAATCCGTTTGGTGGCAAAATCTTGGCTTGATTCTCGT
GGAGATCCTGAGACTGTAAAGACATTGTCAACAGCAACATTGATTGAAGGAATAATGAAC
GTTTTGTTTGCATCCGAAGATGATGAGATCTTGGAACTAGCAATCTCAATCTTAGCAGAA
CTAGTCACTAAGAAGGAGATGAATGGGCAAATCATTCTCAACTCGGATCCACAGCTTGAT
ATTTTCTTGAGACTATTGAGAAGTAGCAGCCTGTTTCTTAAGGCTGCAATTCTACTTTAC
CTAGTGCAGCCTAAGGCTAAACAGATGATATCTATTGAGTGGATTCCATTAGTACTTCGA
GTTTTGGAATTTGCAGATCAGCTGCAGACGTTATTCACGGTTCAACGTAGTCCTCAAGAG
GCTGCATATTTCTTGCTTGATCAACTTCTTACTGGTTTTGATGAAGACAAGAATTTTGAA
AATTGTAGGCAAGTCATTTCACTAGGGGGATTGGGGTTGTTGCTGAGAAGAGTTGAAATG
GGAGATGTCTCAGAAAAGAGTAAGGTTGTTTCTGTTATGTACTGTTGTGTTCAATCTGAT
GGAAGCTGCAGGCATTACCTGGCCAACAACTTGAATAAAGATTGTCTTCTTCCTCTTCTT
TTGCTTCAAAACCAGCAAAACGCCCGCGGACACATTTTTGCATTTCTCACAGAGCTTCTC
TGCATTGACAAGCAAATTCAAAGAATAGAATTATTACGTGGTCTACTAAGTGGATGGGGA
ATGGTGAACACCTTGCACATTTTGCTAGTTTATCTCCAAAGAGCTCAACCAGATGAACGC
CCCATTATCTCTGTCATATTGTTACAGCTTGATCTTTTGGGAGATCTGAATGAGTGCAGT
GTATATAGAGAAGAAGTAATAGAAGAAATAATAAAAGCATTGGACTGTCAAGTATTCAAT
GAGAAAGTCCAAGTACAATCAGCTAGAGCTCTACTTATACTGGGGAGTTGTTTTTCCTAT
ACTGGAGAGCCAATAGTGGAGCAATTGCTGTTAAAAGAAGCAGGCTACGACGAAAACACT
GGGGATTCCTATCTTGGCAAGAACTTCATCCTTAACAGTTATATGCACCTGAATGAAGAG
GAAGAGGCAACAAGAAATTGGCAAAGGAAAACAGCAAGAGTGTTGCTTAACAGTGGAAGC
AAGAGGCTATTGGCTGCTCTTGTAGATACAATAGCCAATGGAATTCCCTGTTTAGGAAGA
GCAAGCCTAGTTACTGTTTCCTGGATGAGCAATTTTTTCTGTTCCATTGAGGATAAAGGA
GTTCGGTCTGTAGTATGTTCGGAGCTAATTCCAGATCTGATGAAGTTATTGAAGTACAAT
AATGTTATAGAGGAAAGAGTTCTTGCTTCACTTTCATTACTCAAACTGGCTAACAATTCA
GATTATTTGGTGAAATTGTCTCCATTGGATAAGGAGCTCATAAGCGACCTGCATAAACTC
TCAGAAGTAACATGGACAGCGAAGGAGCTTATTTCAATTATTTCGAGCAGCTCTAGGCAT
CATCAACTTAATGTACCTTAA

Peptide Sequence

PEP ID

XP_016474567.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana tabacum]
Sequence

MASLQELLTEEGFESTKRTPTKTHRKVKFKDRTTFQEDSNIALPIYICHDRRSSLDFSKN
KSRKPFSSSSSSVHSSIRSNVKSIVEVSIPRRDEPAIDEVAIRAVISILSGFVGQYLRDK
DFRETIKEKCYACFVRKKNHISDNGIFADMELAIESIERLVESIDDTQREVKAKSLQYSI
RLLTIVSSLNSNNTGNVSTCGIPNSNLSACAQLYLSIVYKLEKNDRIAARHLLQVFVDSP
FLARTHLLPELWEHLFLPHLLHLKIWHTQEVEVFSTLDCVDKEKQMKALNKVYNDHIDIG
TTKFALYYKQWLKVGAQAPAVPSVPLPYKLGHSLSRRRSLDSFTSNSSVKNNSLYRAVFG
PIMERKSMDSVRNGIWDYKEEEEKISAIGDDNKQGNYVPKKAVVHRRSSTQSYRTPKHDL
WAHTHKKSDYFRFFNCQSEPVEFLREGKSNIGSVSIRKEEKTTPVSSDLSRAIFMICSSD
SLSDCELAIRLVAKSWLDSRGDPETVKTLSTATLIEGIMNVLFASEDDEILELAISILAE
LVTKKEMNGQIILNSDPQLDIFLRLLRSSSLFLKAAILLYLVQPKAKQMISIEWIPLVLR
VLEFADQLQTLFTVQRSPQEAAYFLLDQLLTGFDEDKNFENCRQVISLGGLGLLLRRVEM
GDVSEKSKVVSVMYCCVQSDGSCRHYLANNLNKDCLLPLLLLQNQQNARGHIFAFLTELL
CIDKQIQRIELLRGLLSGWGMVNTLHILLVYLQRAQPDERPIISVILLQLDLLGDLNECS
VYREEVIEEIIKALDCQVFNEKVQVQSARALLILGSCFSYTGEPIVEQLLLKEAGYDENT
GDSYLGKNFILNSYMHLNEEEEATRNWQRKTARVLLNSGSKRLLAALVDTIANGIPCLGR
ASLVTVSWMSNFFCSIEDKGVRSVVCSELIPDLMKLLKYNNVIEERVLASLSLLKLANNS
DYLVKLSPLDKELISDLHKLSEVTWTAKELISIISSSSRHHQLNVP

Transcript Sequence

Gene sequence data has not been registered.